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Format: 1.0
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: all
Version: 1.7.3-9
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Build-Origin: Debian
Build-Architecture: arm64
Build-Kernel-Version: 6.1.0-15-cloud-arm64 #1 SMP Debian 6.1.66-1 (2023-12-09)
Build-Date: Thu, 14 Dec 2023 13:59:59 +1400
Build-Path: /build/reproducible-path/bioperl-run-1.7.3
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 adduser (= 3.137),
 amap-align (= 2.2+git20080214.600fc29+dfsg-2),
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13),
 base-passwd (= 3.6.3),
 bash (= 5.2.21-2),
 bedtools (= 2.31.1+dfsg-2),
 bedtools-test (= 2.31.1+dfsg-2),
 binutils (= 2.41.50.20231206-1),
 binutils-aarch64-linux-gnu (= 2.41.50.20231206-1),
 binutils-common (= 2.41.50.20231206-1),
 bioperl (= 1.7.8-1),
 bsdextrautils (= 2.39.3-2),
 bsdutils (= 1:2.39.3-2),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5+b1),
 ca-certificates (= 20230311),
 clustalw (= 2.1+lgpl-7),
 coreutils (= 9.1-1),
 cpp (= 4:13.2.0-2),
 cpp-13 (= 13.2.0-7),
 dash (= 0.5.12-6),
 debconf (= 1.5.82),
 debhelper (= 13.11.8),
 debianutils (= 5.14),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.1),
 dpkg-dev (= 1.22.1),
 dwz (= 0.15-1),
 emboss (= 6.6.0+dfsg-12),
 emboss-data (= 6.6.0+dfsg-12),
 emboss-lib (= 6.6.0+dfsg-12),
 exonerate (= 2.4.0-5),
 fasttree (= 2.1.11-2),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 fontconfig-config (= 2.14.2-6),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:13.2.0-2),
 g++-13 (= 13.2.0-7),
 gcc (= 4:13.2.0-2),
 gcc-13 (= 13.2.0-7),
 gcc-13-base (= 13.2.0-7),
 gettext (= 0.21-14),
 gettext-base (= 0.21-14),
 grep (= 3.11-3),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu1),
 hyphy-common (= 2.5.57+dfsg-1),
 hyphy-pt (= 2.5.57+dfsg-1),
 ibverbs-providers (= 48.0-1),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 kalign (= 1:3.3.5-1),
 lagan (= 2.0-9),
 libabsl20220623 (= 20220623.1-3),
 libacl1 (= 2.3.1-3),
 libalgorithm-diff-perl (= 1.201-1),
 libaom3 (= 3.7.1-1),
 libarchive-zip-perl (= 1.68-1),
 libarray-compare-perl (= 3.0.8-1),
 libasan8 (= 13.2.0-7),
 libatomic1 (= 13.2.0-7),
 libattr1 (= 1:2.5.1-4),
 libaudit-common (= 1:3.1.2-1),
 libaudit1 (= 1:3.1.2-1),
 libavif16 (= 1.0.2-1),
 libb-hooks-op-check-perl (= 0.22-2+b1),
 libbinutils (= 2.41.50.20231206-1),
 libbio-asn1-entrezgene-perl (= 1.730-2),
 libbio-cluster-perl (= 1.7.3-6),
 libbio-eutilities-perl (= 1.77-2),
 libbio-featureio-perl (= 1.6.905-2),
 libbio-perl-perl (= 1.7.8-1),
 libbio-perl-run-perl (= 1.7.3-9),
 libbio-tools-run-alignment-clustalw-perl (= 1.7.4-3),
 libbio-tools-run-remoteblast-perl (= 1.7.3-3),
 libbio-variation-perl (= 1.7.5-3),
 libblas3 (= 3.11.0-2),
 libblkid1 (= 2.39.3-2),
 libbrotli1 (= 1.1.0-2+b1),
 libbsd0 (= 0.11.7-4),
 libbz2-1.0 (= 1.0.8-5+b1),
 libc-bin (= 2.37-12),
 libc-dev-bin (= 2.37-12),
 libc6 (= 2.37-12),
 libc6-dev (= 2.37-12),
 libcap-ng0 (= 0.8.3-3),
 libcap2 (= 1:2.66-4),
 libcapture-tiny-perl (= 0.48-2),
 libcbor0.10 (= 0.10.2-1.1),
 libcc1-0 (= 13.2.0-7),
 libclass-data-inheritable-perl (= 0.08-3),
 libclass-method-modifiers-perl (= 2.15-1),
 libclass-xsaccessor-perl (= 1.19-4+b1),
 libclone-perl (= 0.46-1),
 libcom-err2 (= 1.47.0-2+b1),
 libconfig-any-perl (= 0.33-1),
 libcrypt-dev (= 1:4.4.36-2),
 libcrypt1 (= 1:4.4.36-2),
 libctf-nobfd0 (= 2.41.50.20231206-1),
 libctf0 (= 2.41.50.20231206-1),
 libcurl3-gnutls (= 8.4.0-2),
 libdata-stag-perl (= 0.14-3),
 libdav1d7 (= 1.3.0-2),
 libdb5.3 (= 5.3.28+dfsg2-4),
 libde265-0 (= 1.0.13-1),
 libdebconfclient0 (= 0.271),
 libdebhelper-perl (= 13.11.8),
 libdeflate0 (= 1.18-1),
 libdevel-callchecker-perl (= 0.008-2),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdpkg-perl (= 1.22.1),
 libdynaloader-functions-perl (= 0.003-3),
 libedit2 (= 3.1-20230828-1),
 libelf1 (= 0.190-1),
 libencode-locale-perl (= 1.05-3),
 libevent-core-2.1-7 (= 2.1.12-stable-8),
 libevent-pthreads-2.1-7 (= 2.1.12-stable-8),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.5.0-2),
 libexporter-tiny-perl (= 1.006002-1),
 libfabric1 (= 1.17.0-3),
 libffi8 (= 3.4.4-2),
 libfido2-1 (= 1.14.0-1),
 libfile-listing-perl (= 6.16-1),
 libfile-slurp-tiny-perl (= 0.004-2),
 libfile-sort-perl (= 1.01-3),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfontconfig1 (= 2.14.2-6),
 libfreetype6 (= 2.13.2+dfsg-1),
 libgav1-1 (= 0.18.0-1+b1),
 libgcc-13-dev (= 13.2.0-7),
 libgcc-s1 (= 13.2.0-7),
 libgcrypt20 (= 1.10.3-2),
 libgd3 (= 2.3.3-9+b1),
 libgdbm-compat4 (= 1.23-5),
 libgdbm6 (= 1.23-5),
 libgfortran5 (= 13.2.0-7),
 libglib2.0-0 (= 2.78.3-1),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.2-1),
 libgomp1 (= 13.2.0-7),
 libgpg-error0 (= 1.47-3),
 libgprofng0 (= 2.41.50.20231206-1),
 libgssapi-krb5-2 (= 1.20.1-5),
 libheif-plugin-dav1d (= 1.17.1-1+b1),
 libheif-plugin-libde265 (= 1.17.1-1+b1),
 libheif1 (= 1.17.1-1+b1),
 libhogweed6 (= 3.9.1-2),
 libhpdf-2.3.0 (= 2.3.0+dfsg-1+b1),
 libhtml-parser-perl (= 3.81-1),
 libhtml-tagset-perl (= 3.20-6),
 libhtml-tree-perl (= 5.07-3),
 libhts3 (= 1.18+ds-1),
 libhtscodecs2 (= 1.5.2-1),
 libhttp-cookies-perl (= 6.10-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.45-1),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 13.2.0-7),
 libhwloc-plugins (= 2.10.0-1),
 libhwloc15 (= 2.10.0-1),
 libibverbs1 (= 48.0-1),
 libicu72 (= 72.1-4),
 libidn2-0 (= 2.3.4-1+b1),
 libimport-into-perl (= 1.002005-2),
 libio-html-perl (= 1.004-3),
 libio-pty-perl (= 1:1.17-1),
 libio-socket-ssl-perl (= 2.084-1),
 libio-string-perl (= 1.08-4),
 libipc-run-perl (= 20231003.0-1),
 libisl23 (= 0.26-3),
 libitm1 (= 13.2.0-7),
 libjansson4 (= 2.14-2),
 libjbig0 (= 2.1-6.1),
 libjpeg62-turbo (= 1:2.1.5-2),
 libk5crypto3 (= 1.20.1-5),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-5),
 libkrb5support0 (= 1.20.1-5),
 liblapack3 (= 3.11.0-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5),
 liblerc4 (= 4.0.0+ds-4),
 liblmdb0 (= 0.9.31-1),
 liblsan0 (= 13.2.0-7),
 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.11-1),
 liblz4-1 (= 1.9.4-1),
 liblzma5 (= 5.4.5-0.1),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmariadb3 (= 1:10.11.6-1),
 libmbedcrypto7 (= 2.28.5-1),
 libmbedtls14 (= 2.28.5-1),
 libmbedx509-1 (= 2.28.5-1),
 libmd0 (= 1.1.0-1),
 libmodule-build-perl (= 0.423400-2),
 libmodule-pluggable-perl (= 5.2-4),
 libmodule-runtime-perl (= 0.016-2),
 libmoo-perl (= 2.005005-1),
 libmount1 (= 2.39.3-2),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libmunge2 (= 0.5.15-3),
 libncurses6 (= 6.4+20231121-1),
 libncursesw6 (= 6.4+20231121-1),
 libnet-http-perl (= 6.23-1),
 libnet-ssleay-perl (= 1.92-2+b1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnl-3-200 (= 3.7.0-0.2+b1),
 libnl-route-3-200 (= 3.7.0-0.2+b1),
 libnsl-dev (= 1.3.0-3),
 libnsl2 (= 1.3.0-3),
 libopenmpi3 (= 4.1.6-1),
 libp11-kit0 (= 0.25.3-2),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libparams-classify-perl (= 0.015-2+b1),
 libpciaccess0 (= 0.17-3),
 libpcre2-8-0 (= 10.42-4),
 libperl5.36 (= 5.36.0-10),
 libpipeline1 (= 1.5.7-1),
 libpmix2 (= 5.0.1-4),
 libpng16-16 (= 1.6.40-2),
 libpq5 (= 16.1-1),
 libpsl5 (= 0.21.2-1+b1),
 libpython3-stdlib (= 3.11.4-5+b1),
 libpython3.11-minimal (= 3.11.7-2),
 libpython3.11-stdlib (= 3.11.7-2),
 libpython3.12-minimal (= 3.12.1-2),
 libpython3.12-stdlib (= 3.12.1-2),
 librav1e0 (= 0.6.6-4),
 librdmacm1 (= 48.0-1),
 libreadline8 (= 8.2-3),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-4),
 libsasl2-modules-db (= 2.1.28+dfsg1-4),
 libseccomp2 (= 2.5.4-2+b1),
 libselinux1 (= 3.5-1+b1),
 libsemanage-common (= 3.5-1),
 libsemanage2 (= 3.5-1+b1),
 libsepol2 (= 3.5-2),
 libsframe1 (= 2.41.50.20231206-1),
 libsharpyuv0 (= 1.3.2-0.3),
 libsmartcols1 (= 2.39.3-2),
 libsqlite3-0 (= 3.44.2-1),
 libssh2-1 (= 1.11.0-3),
 libssl3 (= 3.0.11-1),
 libstdc++-13-dev (= 13.2.0-7),
 libstdc++6 (= 13.2.0-7),
 libsub-override-perl (= 0.10-1),
 libsub-quote-perl (= 2.006008-1),
 libsub-uplevel-perl (= 0.2800-3),
 libsvtav1enc1d1 (= 1.7.0+dfsg-2),
 libsystemd0 (= 254.5-1),
 libtasn1-6 (= 4.19.0-3),
 libtest-deep-perl (= 1.204-1),
 libtest-differences-perl (= 0.71-1),
 libtest-exception-perl (= 0.43-3),
 libtest-most-perl (= 0.38-1),
 libtest-warn-perl (= 0.37-2),
 libtext-csv-perl (= 2.04-1),
 libtext-diff-perl (= 1.45-2),
 libtiff6 (= 4.5.1+git230720-3),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20231121-1),
 libtirpc-common (= 1.3.4+ds-1),
 libtirpc-dev (= 1.3.4+ds-1),
 libtirpc3 (= 1.3.4+ds-1),
 libtool (= 2.4.7-7),
 libtree-dagnode-perl (= 1.32-1),
 libtry-tiny-perl (= 0.31-2),
 libtsan2 (= 13.2.0-7),
 libtype-tiny-perl (= 2.004000-1),
 libubsan1 (= 13.2.0-7),
 libuchardet0 (= 0.0.8-1),
 libucx0 (= 1.15.0-1),
 libudev1 (= 254.5-1),
 libunistring5 (= 1.1-2),
 liburi-perl (= 5.21-1),
 libuuid1 (= 2.39.3-2),
 libwebp7 (= 1.3.2-0.3),
 libwww-perl (= 6.72-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1+b1),
 libxml-dom-perl (= 1.46-2),
 libxml-dom-xpath-perl (= 0.14-4),
 libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1+b1),
 libxml-namespacesupport-perl (= 1.12-2),
 libxml-parser-perl (= 2.46-4),
 libxml-perl (= 0.08-4),
 libxml-regexp-perl (= 0.04-1.1),
 libxml-sax-base-perl (= 1.09-3),
 libxml-sax-perl (= 1.02+dfsg-3),
 libxml-simple-perl (= 2.25-2),
 libxml-twig-perl (= 1:3.52-2),
 libxml-writer-perl (= 0.900-2),
 libxml-xpathengine-perl (= 0.14-2),
 libxml2 (= 2.9.14+dfsg-1.3+b1),
 libxnvctrl0 (= 525.125.06-1),
 libxpm4 (= 1:3.5.17-1),
 libyuv0 (= 0.0~git20231118.e6d5adb-1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.13-1),
 login (= 1:4.13+dfsg1-3),
 m4 (= 1.4.19-4),
 mafft (= 7.505-1),
 make (= 4.3-4.1),
 man-db (= 2.12.0-1),
 mariadb-common (= 1:10.11.6-1),
 mawk (= 1.3.4.20231126-1),
 media-types (= 10.1.0),
 muscle (= 1:5.1.0-1),
 mysql-common (= 5.8+1.1.0),
 ncbi-blast+ (= 2.12.0+ds-4),
 ncbi-blast+-legacy (= 2.12.0+ds-4),
 ncbi-data (= 6.1.20170106+dfsg1-10),
 ncoils (= 2002-9),
 ncurses-base (= 6.4+20231121-1),
 ncurses-bin (= 6.4+20231121-1),
 netbase (= 6.4),
 ocl-icd-libopencl1 (= 2.3.2-1),
 openmpi-bin (= 4.1.6-1),
 openmpi-common (= 4.1.6-1),
 openssh-client (= 1:9.4p1-1),
 openssl (= 3.0.11-1),
 pal2nal (= 14.1-3),
 passwd (= 1:4.13+dfsg1-3),
 patch (= 2.7.6-7),
 perl (= 5.36.0-10),
 perl-base (= 5.36.0-10),
 perl-modules-5.36 (= 5.36.0-10),
 perl-openssl-defaults (= 7+b1),
 phyml (= 3:3.3.20220408-3),
 po-debconf (= 1.0.21+nmu1),
 primer3 (= 2.6.1-4),
 probcons (= 1.12-14),
 python3 (= 3.11.4-5+b1),
 python3-minimal (= 3.11.4-5+b1),
 python3-numpy (= 1:1.24.2-2),
 python3-pkg-resources (= 68.1.2-2),
 python3-pybedtools (= 0.9.1-1+b1),
 python3-pysam (= 0.22.0+ds-1+b1),
 python3-six (= 1.16.0-4),
 python3.11 (= 3.11.7-2),
 python3.11-minimal (= 3.11.7-2),
 python3.12 (= 3.12.1-2),
 python3.12-minimal (= 3.12.1-2),
 raxml (= 8.2.13+dfsg-1),
 readline-common (= 8.2-3),
 rpcsvc-proto (= 1.4.3-1),
 samtools (= 1.18-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 sim4 (= 0.0.20121010-8),
 sysvinit-utils (= 3.08-3),
 tar (= 1.34+dfsg-1.2),
 tigr-glimmer (= 3.02b-6+b1),
 tzdata (= 2023c-11),
 ucf (= 3.0043+nmu1),
 usr-is-merged (= 38),
 util-linux (= 2.39.3-2),
 wise (= 2.4.1-23),
 wise-data (= 2.4.1-23),
 xz-utils (= 5.4.5-0.1),
 zlib1g (= 1:1.2.13.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="buildinfo=+all reproducible=+all parallel=12 "
 LANG="C"
 LC_ALL="C"
 SOURCE_DATE_EPOCH="1674386787"
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