Format: 1.0
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: all
Version: 1.7.3-7
Checksums-Md5:
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 bd47321ae69d377a2c999dc07cf6ec46 606320 libbio-perl-run-perl_1.7.3-7_all.deb
Checksums-Sha1:
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 83bc6b646cf80021f87402f1ad16ec25be24720e 606320 libbio-perl-run-perl_1.7.3-7_all.deb
Checksums-Sha256:
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 fccc2f64ce5eb3f9c2daed049255e020558802d19e300cabe416ca1debe60694 606320 libbio-perl-run-perl_1.7.3-7_all.deb
Build-Origin: Debian
Build-Architecture: i386
Build-Kernel-Version: 5.10.0-8-686-pae #1 SMP Debian 5.10.46-4 (2021-08-03)
Build-Date: Sun, 19 Sep 2021 07:55:01 +1400
Build-Path: /build/bioperl-run-1.7.3
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 adduser (= 3.118),
 amap-align (= 2.2+git20080214.600fc29+dfsg-2),
 autoconf (= 2.71-2),
 automake (= 1:1.16.4-2),
 autopoint (= 0.21-4),
 autotools-dev (= 20180224.1+nmu1),
 base-files (= 12),
 base-passwd (= 3.5.51),
 bash (= 5.1-3+b1),
 bedtools (= 2.30.0+dfsg-2),
 bedtools-test (= 2.30.0+dfsg-2),
 binutils (= 2.37-5),
 binutils-common (= 2.37-5),
 binutils-i686-linux-gnu (= 2.37-5),
 bioperl (= 1.7.8-1),
 bsdextrautils (= 2.37.2-1),
 bsdutils (= 1:2.37.2-1),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-4),
 ca-certificates (= 20210119),
 clustalw (= 2.1+lgpl-7),
 coreutils (= 8.32-4),
 cpp (= 4:10.2.1-1),
 cpp-10 (= 10.3.0-9),
 dash (= 0.5.11+git20210120+802ebd4-1),
 debconf (= 1.5.77),
 debhelper (= 13.5.1),
 debianutils (= 4.11.2),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.12.0-1),
 diffutils (= 1:3.7-5),
 dpkg (= 1.20.9),
 dpkg-dev (= 1.20.9),
 dwz (= 0.14-1),
 emboss (= 6.6.0+dfsg-9),
 emboss-data (= 6.6.0+dfsg-9),
 emboss-lib (= 6.6.0+dfsg-9),
 exonerate (= 2.4.0-5),
 fasttree (= 2.1.11-2),
 file (= 1:5.39-3),
 findutils (= 4.8.0-1),
 fontconfig-config (= 2.13.1-4.2),
 fonts-dejavu-core (= 2.37-2),
 g++ (= 4:10.2.1-1),
 g++-10 (= 10.3.0-9),
 gcc (= 4:10.2.1-1),
 gcc-10 (= 10.3.0-9),
 gcc-10-base (= 10.3.0-9),
 gcc-11-base (= 11.2.0-4),
 gettext (= 0.21-4),
 gettext-base (= 0.21-4),
 grep (= 3.7-1),
 groff-base (= 1.22.4-6),
 gzip (= 1.10-4),
 hmmer (= 3.3.2+dfsg-1),
 hostname (= 3.23),
 hyphy-common (= 2.5.32+dfsg-1),
 hyphy-pt (= 2.5.32+dfsg-1),
 ibverbs-providers (= 33.2-1),
 infernal (= 1.1.4-1),
 init-system-helpers (= 1.60),
 intltool-debian (= 0.35.0+20060710.5),
 kalign (= 1:3.3-1+b3),
 lagan (= 2.0-6),
 libacl1 (= 2.3.1-1),
 libalgorithm-diff-perl (= 1.201-1),
 libarchive-zip-perl (= 1.68-1),
 libarray-compare-perl (= 3.0.8-1),
 libasan6 (= 11.2.0-4),
 libatomic1 (= 11.2.0-4),
 libattr1 (= 1:2.5.1-1),
 libaudit-common (= 1:3.0.5-1),
 libaudit1 (= 1:3.0.5-1),
 libb-hooks-op-check-perl (= 0.22-1+b3),
 libbinutils (= 2.37-5),
 libbio-asn1-entrezgene-perl (= 1.730-2),
 libbio-cluster-perl (= 1.7.3-5),
 libbio-db-ncbihelper-perl (= 1.7.6-4),
 libbio-eutilities-perl (= 1.77-1),
 libbio-featureio-perl (= 1.6.905-2),
 libbio-perl-perl (= 1.7.8-1),
 libbio-perl-run-perl (= 1.7.3-7),
 libbio-tools-run-alignment-clustalw-perl (= 1.7.4-2),
 libbio-tools-run-remoteblast-perl (= 1.7.3-3),
 libbio-variation-perl (= 1.7.5-2),
 libblkid1 (= 2.37.2-1),
 libbrotli1 (= 1.0.9-2+b2),
 libbsd0 (= 0.11.3-1),
 libbz2-1.0 (= 1.0.8-4),
 libc-bin (= 2.31-17),
 libc-dev-bin (= 2.31-17),
 libc6 (= 2.31-17),
 libc6-dev (= 2.31-17),
 libcache-cache-perl (= 1.08-2),
 libcap-ng0 (= 0.7.9-2.2+b1),
 libcapture-tiny-perl (= 0.48-1),
 libcbor0 (= 0.5.0+dfsg-2),
 libcc1-0 (= 11.2.0-4),
 libcgi-pm-perl (= 4.53-1),
 libclass-data-inheritable-perl (= 0.08-3),
 libclass-method-modifiers-perl (= 2.13-1),
 libcom-err2 (= 1.46.4-1),
 libconfig-any-perl (= 0.32-1),
 libcrypt-dev (= 1:4.4.25-2),
 libcrypt1 (= 1:4.4.25-2),
 libctf-nobfd0 (= 2.37-5),
 libctf0 (= 2.37-5),
 libcurl3-gnutls (= 7.74.0-1.3+b1),
 libdata-stag-perl (= 0.14-2),
 libdb5.3 (= 5.3.28+dfsg1-0.8),
 libdebconfclient0 (= 0.260),
 libdebhelper-perl (= 13.5.1),
 libdeflate0 (= 1.7-2),
 libdevel-callchecker-perl (= 0.008-1+b2),
 libdevel-stacktrace-perl (= 2.0400-1),
 libdivsufsort3 (= 2.0.1-5),
 libdpkg-perl (= 1.20.9),
 libdynaloader-functions-perl (= 0.003-1.1),
 libedit2 (= 3.1-20210714-1),
 libelf1 (= 0.185-2),
 libencode-locale-perl (= 1.05-1.1),
 liberror-perl (= 0.17029-1),
 libevent-core-2.1-7 (= 2.1.12-stable-1),
 libevent-pthreads-2.1-7 (= 2.1.12-stable-1),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.2.10-2),
 libexporter-tiny-perl (= 1.002002-1),
 libfabric1 (= 1.11.0-2),
 libffi7 (= 3.3-6),
 libfido2-1 (= 1.8.0-1),
 libfile-listing-perl (= 6.14-1),
 libfile-slurp-tiny-perl (= 0.004-1),
 libfile-sort-perl (= 1.01-2),
 libfile-stripnondeterminism-perl (= 1.12.0-1),
 libfontconfig1 (= 2.13.1-4.2),
 libfreetype6 (= 2.10.4+dfsg-1),
 libgcc-10-dev (= 10.3.0-9),
 libgcc-s1 (= 11.2.0-4),
 libgcrypt20 (= 1.9.4-2),
 libgd3 (= 2.3.0-2),
 libgdbm-compat4 (= 1.20-1),
 libgdbm6 (= 1.20-1),
 libglib2.0-0 (= 2.68.4-1),
 libgmp10 (= 2:6.2.1+dfsg-1),
 libgnutls30 (= 3.7.2-2),
 libgomp1 (= 11.2.0-4),
 libgpg-error0 (= 1.42-3),
 libgssapi-krb5-2 (= 1.18.3-7),
 libhogweed6 (= 3.7.3-1),
 libhpdf-2.3.0 (= 2.3.0+dfsg-1+b1),
 libhtml-parser-perl (= 3.76-1),
 libhtml-tagset-perl (= 3.20-4),
 libhtml-tree-perl (= 5.07-2),
 libhts3 (= 1.13+ds-2),
 libhtscodecs2 (= 1.1.1-2),
 libhttp-cookies-perl (= 6.10-1),
 libhttp-date-perl (= 6.05-1),
 libhttp-message-perl (= 6.33-1),
 libhttp-negotiate-perl (= 6.01-1),
 libhwloc-plugins (= 2.5.0+dfsg-2),
 libhwloc15 (= 2.5.0+dfsg-2),
 libibverbs1 (= 33.2-1),
 libicu67 (= 67.1-7),
 libidn2-0 (= 2.3.2-2),
 libimport-into-perl (= 1.002005-1),
 libio-html-perl (= 1.004-2),
 libio-pty-perl (= 1:1.15-2),
 libio-socket-ssl-perl (= 2.072-1),
 libio-string-perl (= 1.08-3.1),
 libipc-run-perl (= 20200505.0-1),
 libipc-sharelite-perl (= 0.17-4+b5),
 libisl23 (= 0.23-1),
 libitm1 (= 11.2.0-4),
 libjbig0 (= 2.1-3.1+b2),
 libjpeg62-turbo (= 1:2.0.6-4),
 libk5crypto3 (= 1.18.3-7),
 libkeyutils1 (= 1.6.1-2),
 libkrb5-3 (= 1.18.3-7),
 libkrb5support0 (= 1.18.3-7),
 libldap-2.4-2 (= 2.4.59+dfsg-1),
 liblmdb0 (= 0.9.24-1),
 liblwp-mediatypes-perl (= 6.04-1),
 liblwp-protocol-https-perl (= 6.10-1),
 liblz4-1 (= 1.9.3-2),
 liblzma5 (= 5.2.5-2),
 libmagic-mgc (= 1:5.39-3),
 libmagic1 (= 1:5.39-3),
 libmariadb3 (= 1:10.5.12-1),
 libmbedcrypto3 (= 2.16.9-0.1),
 libmbedtls12 (= 2.16.9-0.1),
 libmbedx509-0 (= 2.16.9-0.1),
 libmd0 (= 1.0.3-3),
 libmodule-build-perl (= 0.423100-1),
 libmodule-pluggable-perl (= 5.2-1),
 libmodule-runtime-perl (= 0.016-1),
 libmoo-perl (= 2.005004-2),
 libmount1 (= 2.37.2-1),
 libmpc3 (= 1.2.0-1),
 libmpdec3 (= 2.5.1-2),
 libmpfr6 (= 4.1.0-3),
 libncurses6 (= 6.2+20201114-4),
 libncursesw6 (= 6.2+20201114-4),
 libnet-http-perl (= 6.21-1),
 libnet-ssleay-perl (= 1.88-3+b1),
 libnettle8 (= 3.7.3-1),
 libnghttp2-14 (= 1.43.0-1),
 libnl-3-200 (= 3.4.0-1+b1),
 libnl-route-3-200 (= 3.4.0-1+b1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libopenmpi3 (= 4.1.0-10),
 libp11-kit0 (= 0.24.0-2),
 libpam-modules (= 1.4.0-10),
 libpam-modules-bin (= 1.4.0-10),
 libpam-runtime (= 1.4.0-10),
 libpam0g (= 1.4.0-10),
 libparams-classify-perl (= 0.015-1+b3),
 libpciaccess0 (= 0.16-1),
 libpcre2-8-0 (= 10.36-2),
 libpcre3 (= 2:8.39-13),
 libperl5.32 (= 5.32.1-5),
 libpipeline1 (= 1.5.3-1),
 libpmix2 (= 4.1.0-3),
 libpng16-16 (= 1.6.37-3),
 libpq5 (= 13.4-3),
 libpsl5 (= 0.21.0-1.2),
 libpsm-infinipath1 (= 3.3+20.604758e7-6.1),
 libpython3-stdlib (= 3.9.2-3),
 libpython3.9-minimal (= 3.9.7-2),
 libpython3.9-stdlib (= 3.9.7-2),
 libquadmath0 (= 11.2.0-4),
 librdmacm1 (= 33.2-1),
 libreadline8 (= 8.1-2),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.27+dfsg-2.1),
 libsasl2-modules-db (= 2.1.27+dfsg-2.1),
 libseccomp2 (= 2.5.1-1),
 libselinux1 (= 3.1-3),
 libsemanage-common (= 3.1-1),
 libsemanage1 (= 3.1-1+b2),
 libsepol1 (= 3.1-1),
 libsigsegv2 (= 2.13-1),
 libsmartcols1 (= 2.37.2-1),
 libsqlite3-0 (= 3.36.0-2),
 libssh2-1 (= 1.9.0-3),
 libssl1.1 (= 1.1.1l-1),
 libstdc++-10-dev (= 10.3.0-9),
 libstdc++6 (= 11.2.0-4),
 libsub-override-perl (= 0.09-2),
 libsub-quote-perl (= 2.006006-1),
 libsub-uplevel-perl (= 0.2800-1.1),
 libsystemd0 (= 247.9-1),
 libtasn1-6 (= 4.17.0-2),
 libtest-deep-perl (= 1.130-1),
 libtest-differences-perl (= 0.68-1),
 libtest-exception-perl (= 0.43-1),
 libtest-most-perl (= 0.37-1),
 libtest-warn-perl (= 0.36-1),
 libtext-csv-perl (= 2.01-1),
 libtext-diff-perl (= 1.45-1),
 libtiff5 (= 4.2.0-1),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.2+20201114-4),
 libtirpc-common (= 1.3.2-2),
 libtirpc-dev (= 1.3.2-2),
 libtirpc3 (= 1.3.2-2),
 libtool (= 2.4.6-15),
 libtree-dagnode-perl (= 1.32-1),
 libtry-tiny-perl (= 0.30-1),
 libtype-tiny-perl (= 1.012004-1),
 libubsan1 (= 11.2.0-4),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 247.9-1),
 libunistring2 (= 0.9.10-6),
 liburi-perl (= 5.08-1),
 libuuid1 (= 2.37.2-1),
 libwebp6 (= 0.6.1-2.1),
 libwww-perl (= 6.53-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.7.2-1),
 libx11-data (= 2:1.7.2-1),
 libxau6 (= 1:1.0.9-1),
 libxcb1 (= 1.14-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.3-1.1),
 libxml-dom-perl (= 1.46-1),
 libxml-dom-xpath-perl (= 0.14-3),
 libxml-libxml-perl (= 2.0134+dfsg-2+b1),
 libxml-namespacesupport-perl (= 1.12-1.1),
 libxml-parser-perl (= 2.46-2),
 libxml-perl (= 0.08-3.1),
 libxml-regexp-perl (= 0.04-1.1),
 libxml-sax-base-perl (= 1.09-1.1),
 libxml-sax-perl (= 1.02+dfsg-3),
 libxml-simple-perl (= 2.25-1),
 libxml-twig-perl (= 1:3.52-1),
 libxml-writer-perl (= 0.900-1),
 libxml-xpathengine-perl (= 0.14-1),
 libxml2 (= 2.9.10+dfsg-6.7),
 libxnvctrl0 (= 470.57.02-2),
 libxpm4 (= 1:3.5.12-1),
 libzstd1 (= 1.4.8+dfsg-2.1),
 linux-libc-dev (= 5.10.46-4),
 login (= 1:4.8.1-1),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-5),
 mafft (= 7.487-1),
 make (= 4.3-4.1),
 man-db (= 2.9.4-2),
 mariadb-common (= 1:10.5.12-1),
 mawk (= 1.3.4.20200120-2),
 media-types (= 4.0.0),
 muscle (= 1:3.8.1551-2),
 mysql-common (= 5.8+1.0.7),
 ncbi-blast+ (= 2.11.0+ds-1),
 ncbi-blast+-legacy (= 2.11.0+ds-1),
 ncbi-data (= 6.1.20170106+dfsg1-9),
 ncoils (= 2002-9),
 ncurses-base (= 6.2+20201114-4),
 ncurses-bin (= 6.2+20201114-4),
 netbase (= 6.3),
 ocl-icd-libopencl1 (= 2.2.14-2),
 openmpi-bin (= 4.1.0-10),
 openmpi-common (= 4.1.0-10),
 openssh-client (= 1:8.4p1-6),
 openssl (= 1.1.1l-1),
 pal2nal (= 14.1-3),
 passwd (= 1:4.8.1-1),
 patch (= 2.7.6-7),
 perl (= 5.32.1-5),
 perl-base (= 5.32.1-5),
 perl-modules-5.32 (= 5.32.1-5),
 perl-openssl-defaults (= 5),
 phyml (= 3:3.3.20200621-1),
 po-debconf (= 1.0.21+nmu1),
 primer3 (= 2.4.0-4),
 probcons (= 1.12-14),
 python3 (= 3.9.2-3),
 python3-minimal (= 3.9.2-3),
 python3-pybedtools (= 0.8.0-5),
 python3-pysam (= 0.15.4+ds-3+b2),
 python3-six (= 1.16.0-2),
 python3.9 (= 3.9.7-2),
 python3.9-minimal (= 3.9.7-2),
 raxml (= 8.2.12+dfsg-6+b4),
 readline-common (= 8.1-2),
 rpcsvc-proto (= 1.4.2-4),
 samtools (= 1.13-2),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sim4 (= 0.0.20121010-8),
 sysvinit-utils (= 2.96-7),
 tar (= 1.34+dfsg-1),
 tigr-glimmer (= 3.02b-5),
 tzdata (= 2021a-1),
 ucf (= 3.0043),
 util-linux (= 2.37.2-1),
 wise (= 2.4.1-23),
 wise-data (= 2.4.1-23),
 xz-utils (= 5.2.5-2),
 zlib1g (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="buildinfo=+all reproducible=+all parallel=7"
 LANG="C"
 LC_ALL="C"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1631638371"