Format: 1.0
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: all
Version: 1.7.3-10
Checksums-Md5:
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 49e4025a4007c229ec46a4ec73de5cbc 527544 libbio-perl-run-perl_1.7.3-10_all.deb
Checksums-Sha1:
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 c81fc2e13557572ee7b6163eceb17c771f661b9e 527544 libbio-perl-run-perl_1.7.3-10_all.deb
Checksums-Sha256:
 b18567bbe0f437dd935c917fb192252631387e6bcac1930dcea25004dbeff016 35908 bioperl-run_1.7.3-10_all.deb
 897fd23ee394f4b82ef593c50568d2359fbbf709745d8e053b295507bb0c97e1 527544 libbio-perl-run-perl_1.7.3-10_all.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Kernel-Version: 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11)
Build-Date: Mon, 22 Apr 2024 06:31:45 -1200
Build-Path: /build/reproducible-path/bioperl-run-1.7.3
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 adduser (= 3.137),
 amap-align (= 2.2+git20080214.600fc29+dfsg-2),
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13.1),
 base-passwd (= 3.6.3),
 bash (= 5.2.21-2),
 bedtools (= 2.31.1+dfsg-2),
 bedtools-test (= 2.31.1+dfsg-2),
 binutils (= 2.42-4),
 binutils-common (= 2.42-4),
 binutils-x86-64-linux-gnu (= 2.42-4),
 bioperl (= 1.7.8-1),
 bsdextrautils (= 2.40-6),
 bsdutils (= 1:2.40-6),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5.1),
 ca-certificates (= 20240203),
 clustalw (= 2.1+lgpl-7),
 coreutils (= 9.4-3.1),
 cpp (= 4:13.2.0-7),
 cpp-13 (= 13.2.0-23),
 cpp-13-x86-64-linux-gnu (= 13.2.0-23),
 cpp-x86-64-linux-gnu (= 4:13.2.0-7),
 dash (= 0.5.12-6),
 debconf (= 1.5.86),
 debhelper (= 13.15.3),
 debianutils (= 5.17),
 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.6),
 dpkg-dev (= 1.22.6),
 dwz (= 0.15-1+b1),
 emboss (= 6.6.0+dfsg-15),
 emboss-data (= 6.6.0+dfsg-15),
 emboss-lib (= 6.6.0+dfsg-15),
 exonerate (= 2.4.0-5+b1),
 fasttree (= 2.1.11-2),
 file (= 1:5.45-3),
 findutils (= 4.9.0-5),
 fontconfig-config (= 2.15.0-1.1),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:13.2.0-7),
 g++-13 (= 13.2.0-23),
 g++-13-x86-64-linux-gnu (= 13.2.0-23),
 g++-x86-64-linux-gnu (= 4:13.2.0-7),
 gcc (= 4:13.2.0-7),
 gcc-13 (= 13.2.0-23),
 gcc-13-base (= 13.2.0-23),
 gcc-13-x86-64-linux-gnu (= 13.2.0-23),
 gcc-14-base (= 14-20240330-1),
 gcc-x86-64-linux-gnu (= 4:13.2.0-7),
 gettext (= 0.21-14+b1),
 gettext-base (= 0.21-14+b1),
 grep (= 3.11-4),
 groff-base (= 1.23.0-3+b1),
 gzip (= 1.12-1.1),
 hmmer (= 3.4+dfsg-2),
 hostname (= 3.23+nmu2),
 hyphy-common (= 2.5.60+dfsg-1),
 hyphy-pt (= 2.5.60+dfsg-1),
 ibverbs-providers (= 50.0-2+b1),
 infernal (= 1.1.5-2),
 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
 kalign (= 1:3.4.0-1),
 lagan (= 2.0-10),
 libabsl20230802 (= 20230802.1-4),
 libacl1 (= 2.3.2-1),
 libalgorithm-diff-perl (= 1.201-1),
 libamd-comgr2 (= 6.0+git20231212.4510c28+dfsg-3+b1),
 libamdhip64-5 (= 5.7.1-3),
 libaom3 (= 3.8.2-2),
 libarchive-zip-perl (= 1.68-1),
 libarray-compare-perl (= 3.0.8-1),
 libasan8 (= 14-20240330-1),
 libatomic1 (= 14-20240330-1),
 libattr1 (= 1:2.5.2-1),
 libaudit-common (= 1:3.1.2-2.1),
 libaudit1 (= 1:3.1.2-2.1),
 libavif16 (= 1.0.4-2),
 libb-hooks-op-check-perl (= 0.22-3+b1),
 libbinutils (= 2.42-4),
 libbio-asn1-entrezgene-perl (= 1.730-3),
 libbio-cluster-perl (= 1.7.3-6),
 libbio-eutilities-perl (= 1.77-2),
 libbio-featureio-perl (= 1.6.905-2),
 libbio-perl-perl (= 1.7.8-1),
 libbio-perl-run-perl (= 1.7.3-10),
 libbio-tools-run-alignment-clustalw-perl (= 1.7.4-4),
 libbio-tools-run-remoteblast-perl (= 1.7.3-3),
 libbio-variation-perl (= 1.7.5-3),
 libblas3 (= 3.12.0-3),
 libblkid1 (= 2.40-6),
 libbrotli1 (= 1.1.0-2+b3),
 libbsd0 (= 0.12.2-1),
 libbz2-1.0 (= 1.0.8-5.1),
 libc-bin (= 2.37-18),
 libc-dev-bin (= 2.37-18),
 libc6 (= 2.37-18),
 libc6-dev (= 2.37-18),
 libcap-ng0 (= 0.8.5-1),
 libcap2 (= 1:2.66-5),
 libcapture-tiny-perl (= 0.48-2),
 libcbor0.10 (= 0.10.2-1.2),
 libcc1-0 (= 14-20240330-1),
 libclass-data-inheritable-perl (= 0.08-3),
 libclass-method-modifiers-perl (= 2.15-1),
 libclass-xsaccessor-perl (= 1.19-4+b3),
 libclone-perl (= 0.46-1+b2),
 libcom-err2 (= 1.47.0-2.4),
 libconfig-any-perl (= 0.33-1),
 libcrypt-dev (= 1:4.4.36-4),
 libcrypt1 (= 1:4.4.36-4),
 libctf-nobfd0 (= 2.42-4),
 libctf0 (= 2.42-4),
 libcurl3t64-gnutls (= 8.7.1-3),
 libdata-stag-perl (= 0.14-3),
 libdav1d7 (= 1.4.1-1),
 libdb5.3t64 (= 5.3.28+dfsg2-7),
 libde265-0 (= 1.0.15-1+b1),
 libdebconfclient0 (= 0.271+b3),
 libdebhelper-perl (= 13.15.3),
 libdeflate0 (= 1.20-1),
 libdevel-callchecker-perl (= 0.008-2+b2),
 libdevel-stacktrace-perl (= 2.0500-1),
 libdivsufsort3 (= 2.0.1-6),
 libdpkg-perl (= 1.22.6),
 libdrm-amdgpu1 (= 2.4.120-2),
 libdrm-common (= 2.4.120-2),
 libdrm2 (= 2.4.120-2),
 libdynaloader-functions-perl (= 0.003-3),
 libedit2 (= 3.1-20230828-1),
 libelf1t64 (= 0.191-1+b1),
 libencode-locale-perl (= 1.05-3),
 libevent-core-2.1-7t64 (= 2.1.12-stable-8.1+b3),
 libevent-pthreads-2.1-7t64 (= 2.1.12-stable-8.1+b3),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.6.2-1),
 libexporter-tiny-perl (= 1.006002-1),
 libfabric1 (= 1.17.0-3+b1),
 libffi8 (= 3.4.6-1),
 libfido2-1 (= 1.14.0-1+b2),
 libfile-listing-perl (= 6.16-1),
 libfile-slurp-perl (= 9999.32-2),
 libfile-slurp-tiny-perl (= 0.004-2),
 libfile-sort-perl (= 1.01-3),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfontconfig1 (= 2.15.0-1.1),
 libfreetype6 (= 2.13.2+dfsg-1+b4),
 libgav1-1 (= 0.19.0-2),
 libgcc-13-dev (= 13.2.0-23),
 libgcc-s1 (= 14-20240330-1),
 libgcrypt20 (= 1.10.3-2),
 libgd3 (= 2.3.3-9+b3),
 libgdbm-compat4t64 (= 1.23-5.1+b1),
 libgdbm6t64 (= 1.23-5.1+b1),
 libgfortran5 (= 14-20240330-1),
 libglib2.0-0t64 (= 2.78.4-6),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
 libgnutls30t64 (= 3.8.5-2),
 libgomp1 (= 14-20240330-1),
 libgpg-error0 (= 1.47-3),
 libgprofng0 (= 2.42-4),
 libgssapi-krb5-2 (= 1.20.1-6+b1),
 libheif-plugin-dav1d (= 1.17.6-1+b2),
 libheif-plugin-libde265 (= 1.17.6-1+b2),
 libheif1 (= 1.17.6-1+b2),
 libhogweed6t64 (= 3.9.1-2.2),
 libhpdf-2.3.0 (= 2.3.0+dfsg-1+b2),
 libhsa-runtime64-1 (= 5.7.1-2),
 libhsakmt1 (= 5.7.0-1),
 libhtml-parser-perl (= 3.82-1),
 libhtml-tagset-perl (= 3.24-1),
 libhtml-tree-perl (= 5.07-3),
 libhts3t64 (= 1.19+ds-1.1+b1),
 libhtscodecs2 (= 1.6.0-1+b1),
 libhttp-cookies-perl (= 6.11-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.45-1),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 14-20240330-1),
 libhwloc-plugins (= 2.10.0-1+b1),
 libhwloc15 (= 2.10.0-1+b1),
 libibverbs1 (= 50.0-2+b1),
 libicu72 (= 72.1-4+b1),
 libidn2-0 (= 2.3.7-2),
 libimport-into-perl (= 1.002005-2),
 libio-html-perl (= 1.004-3),
 libio-pty-perl (= 1:1.20-1+b1),
 libio-socket-ssl-perl (= 2.085-1),
 libio-string-perl (= 1.08-4),
 libipc-run-perl (= 20231003.0-2),
 libisl23 (= 0.26-3+b2),
 libitm1 (= 14-20240330-1),
 libjansson4 (= 2.14-2+b2),
 libjbig0 (= 2.1-6.1+b1),
 libjpeg62-turbo (= 1:2.1.5-2+b2),
 libk5crypto3 (= 1.20.1-6+b1),
 libkeyutils1 (= 1.6.3-3),
 libkrb5-3 (= 1.20.1-6+b1),
 libkrb5support0 (= 1.20.1-6+b1),
 liblapack3 (= 3.12.0-3),
 libldap-2.5-0 (= 2.5.16+dfsg-2),
 liblerc4 (= 4.0.0+ds-4+b1),
 libllvm17t64 (= 1:17.0.6-9+b2),
 liblmdb0 (= 0.9.31-1+b1),
 liblsan0 (= 14-20240330-1),
 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.14-1),
 liblz4-1 (= 1.9.4-2),
 liblzma5 (= 5.6.1+really5.4.5-1),
 libmagic-mgc (= 1:5.45-3),
 libmagic1t64 (= 1:5.45-3),
 libmariadb3 (= 1:10.11.7-4),
 libmbedcrypto7t64 (= 2.28.8-1),
 libmbedtls14t64 (= 2.28.8-1),
 libmbedx509-1t64 (= 2.28.8-1),
 libmd0 (= 1.1.0-2),
 libmodule-build-perl (= 0.423400-2),
 libmodule-pluggable-perl (= 5.2-5),
 libmodule-runtime-perl (= 0.016-2),
 libmoo-perl (= 2.005005-1),
 libmount1 (= 2.40-6),
 libmpc3 (= 1.3.1-1+b2),
 libmpfr6 (= 4.2.1-1+b1),
 libmunge2 (= 0.5.15-4),
 libncurses6 (= 6.4+20240414-1),
 libncursesw6 (= 6.4+20240414-1),
 libnet-http-perl (= 6.23-1),
 libnet-ssleay-perl (= 1.94-1+b1),
 libnettle8t64 (= 3.9.1-2.2),
 libnghttp2-14 (= 1.61.0-1+b1),
 libnl-3-200 (= 3.7.0-0.3),
 libnl-route-3-200 (= 3.7.0-0.3),
 libnuma1 (= 2.0.18-1),
 libopenmpi3t64 (= 4.1.6-12),
 libp11-kit0 (= 0.25.3-4),
 libpam-modules (= 1.5.3-7),
 libpam-modules-bin (= 1.5.3-7),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7),
 libparams-classify-perl (= 0.015-2+b3),
 libpciaccess0 (= 0.17-3),
 libpcre2-8-0 (= 10.42-4+b1),
 libperl5.38t64 (= 5.38.2-3.2+b2),
 libpipeline1 (= 1.5.7-2),
 libpmix2t64 (= 5.0.2-3),
 libpng16-16t64 (= 1.6.43-5),
 libpq5 (= 16.2-2+b1),
 libpsl5t64 (= 0.21.2-1.1),
 libpsm-infinipath1 (= 3.3+20.604758e7-6.3),
 libpsm2-2 (= 11.2.185-2),
 libpython3-stdlib (= 3.11.8-1),
 libpython3.11-minimal (= 3.11.9-1),
 libpython3.11-stdlib (= 3.11.9-1),
 libquadmath0 (= 14-20240330-1),
 librav1e0 (= 0.7.1-2),
 librdmacm1t64 (= 50.0-2+b1),
 libreadline8t64 (= 8.2-4),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
 libsasl2-2 (= 2.1.28+dfsg1-6),
 libsasl2-modules-db (= 2.1.28+dfsg1-6),
 libseccomp2 (= 2.5.5-1),
 libselinux1 (= 3.5-2+b2),
 libsemanage-common (= 3.5-1),
 libsemanage2 (= 3.5-1+b3),
 libsepol2 (= 3.5-2),
 libsframe1 (= 2.42-4),
 libsharpyuv0 (= 1.3.2-0.4+b1),
 libsmartcols1 (= 2.40-6),
 libsqlite3-0 (= 3.45.3-1),
 libssh2-1t64 (= 1.11.0-4.1+b2),
 libssl3t64 (= 3.2.1-3),
 libstdc++-13-dev (= 13.2.0-23),
 libstdc++6 (= 14-20240330-1),
 libsub-override-perl (= 0.10-1),
 libsub-quote-perl (= 2.006008-1),
 libsub-uplevel-perl (= 0.2800-3),
 libsvtav1enc1d1 (= 1.7.0+dfsg-2+b1),
 libsystemd0 (= 255.4-1+b1),
 libtasn1-6 (= 4.19.0-3+b2),
 libtest-deep-perl (= 1.204-1),
 libtest-differences-perl (= 0.71-1),
 libtest-exception-perl (= 0.43-3),
 libtest-most-perl (= 0.38-1),
 libtest-warn-perl (= 0.37-2),
 libtext-csv-perl (= 2.04-1),
 libtext-diff-perl (= 1.45-2),
 libtiff6 (= 4.5.1+git230720-4),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20240414-1),
 libtool (= 2.4.7-7),
 libtree-dagnode-perl (= 1.32-1),
 libtry-tiny-perl (= 0.31-2),
 libtsan2 (= 14-20240330-1),
 libtype-tiny-perl (= 2.004000-1),
 libubsan1 (= 14-20240330-1),
 libuchardet0 (= 0.0.8-1+b1),
 libucx0 (= 1.16.0+ds-5),
 libudev1 (= 255.4-1+b1),
 libunistring5 (= 1.2-1),
 liburi-perl (= 5.28-1),
 libuuid1 (= 2.40-6),
 libwebp7 (= 1.3.2-0.4+b1),
 libwww-perl (= 6.77-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb1 (= 1.17.0-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1+b1),
 libxml-dom-perl (= 1.46-2),
 libxml-dom-xpath-perl (= 0.14-4),
 libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1+b3),
 libxml-namespacesupport-perl (= 1.12-2),
 libxml-parser-perl (= 2.47-1+b2),
 libxml-perl (= 0.08-4),
 libxml-regexp-perl (= 0.04-1.1),
 libxml-sax-base-perl (= 1.09-3),
 libxml-sax-perl (= 1.02+dfsg-3),
 libxml-simple-perl (= 2.25-2),
 libxml-twig-perl (= 1:3.52-3),
 libxml-writer-perl (= 0.900-2),
 libxml-xpathengine-perl (= 0.14-2),
 libxml2 (= 2.9.14+dfsg-1.3+b2),
 libxnvctrl0 (= 535.171.04-1),
 libxpm4 (= 1:3.5.17-1+b1),
 libyuv0 (= 0.0~git202401110.af6ac82-1),
 libz3-4 (= 4.8.12-3.1+b2),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.7.9-2),
 login (= 1:4.13+dfsg1-4),
 m4 (= 1.4.19-4),
 mafft (= 7.505-1),
 make (= 4.3-4.1),
 man-db (= 2.12.1-1),
 mariadb-common (= 1:10.11.7-4),
 mawk (= 1.3.4.20240123-1),
 media-types (= 10.1.0),
 muscle (= 1:5.1.0-1),
 mysql-common (= 5.8+1.1.0),
 ncbi-blast+ (= 2.12.0+ds-4+b1),
 ncbi-blast+-legacy (= 2.12.0+ds-4),
 ncbi-data (= 6.1.20170106+dfsg2-2),
 ncoils (= 2002-9),
 ncurses-base (= 6.4+20240414-1),
 ncurses-bin (= 6.4+20240414-1),
 netbase (= 6.4),
 ocl-icd-libopencl1 (= 2.3.2-1+b1),
 openmpi-bin (= 4.1.6-12),
 openmpi-common (= 4.1.6-12),
 openssh-client (= 1:9.7p1-4),
 openssl (= 3.2.1-3),
 pal2nal (= 14.1-3),
 passwd (= 1:4.13+dfsg1-4),
 patch (= 2.7.6-7),
 perl (= 5.38.2-3.2+b2),
 perl-base (= 5.38.2-3.2+b2),
 perl-modules-5.38 (= 5.38.2-3.2),
 perl-openssl-defaults (= 7+b2),
 pftools (= 3.2.12-1),
 phyml (= 3:3.3.20220408-3+b1),
 po-debconf (= 1.0.21+nmu1),
 primer3 (= 2.6.1-4),
 probcons (= 1.12-14),
 python3 (= 3.11.8-1),
 python3-minimal (= 3.11.8-1),
 python3-numpy (= 1:1.26.4+ds-6),
 python3-pkg-resources (= 68.1.2-2),
 python3-pybedtools (= 0.9.1-1+b1),
 python3-pysam (= 0.22.0+ds-1+b2),
 python3-six (= 1.16.0-6),
 python3.11 (= 3.11.9-1),
 python3.11-minimal (= 3.11.9-1),
 raxml (= 8.2.13+dfsg-1),
 readline-common (= 8.2-4),
 rpcsvc-proto (= 1.4.3-1),
 samtools (= 1.19.2-1+b1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.22),
 sim4 (= 0.0.20121010-8),
 sysvinit-utils (= 3.09-1),
 tar (= 1.35+dfsg-3),
 tigr-glimmer (= 3.02b-6+b1),
 tzdata (= 2024a-3),
 ucf (= 3.0043+nmu1),
 usr-is-merged (= 39),
 util-linux (= 2.40-6),
 wise (= 2.4.1-24),
 wise-data (= 2.4.1-24),
 xz-utils (= 5.6.1+really5.4.5-1),
 zlib1g (= 1:1.3.dfsg-3.1)
Environment:
 DEB_BUILD_OPTIONS="buildinfo=+all reproducible=+all parallel=12 "
 LANG="C"
 LC_ALL="C"
 SOURCE_DATE_EPOCH="1710273923"